A C D E F G H I L M N O P R S T U V W

G

Group - interface de.zimek.proteinfeatures.groups.Group.

getAAIndexName() - Method in interface de.zimek.proteinfeatures.aaindex.AAIndex

Returns the name of the actual AAIndex.

getAAIndexName() - Method in class de.zimek.proteinfeatures.aaindex.OobatakeOoi

Returns the name of this AAIndex: OobatakeOoi.

getAS() - Method in class de.zimek.proteinfeatures.protein.Protein

getArchitecture() - Method in class de.zimek.proteinfeatures.protein.CathID

getAstralID() - Method in class de.zimek.proteinfeatures.protein.Protein

getAttribute(Protein) - Method in class de.zimek.proteinfeatures.attributeAssigner.AbstractArffRealAttributeAssigner

getAttribute(Protein) - Method in interface de.zimek.proteinfeatures.attributeAssigner.ArffAttributeAssigner

Returns the attribute-list in arff format (comma separated).

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.AbstractGroupAssigner

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.AbstractGroupTransitionAssigner

getAttributeDefinition() - Method in interface de.zimek.proteinfeatures.attributeAssigner.ArffAttributeAssigner

Provides the attribute-definition in arff-format with an ending newline.

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.AutoCorrelationFunction

If m is not set, the description-String will be empty.

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.ProteinLength

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingAttribute

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingCompositionLength

getAttributeDefinition() - Method in class de.zimek.proteinfeatures.attributeAssigner.distribution.AbstractGroupDistributionAssigner

getAttributeNamePrefix() - Method in class de.zimek.proteinfeatures.groups.AA

getAttributeNamePrefix() - Method in class de.zimek.proteinfeatures.groups.AbstractGroup

getAttributeNamePrefix() - Method in interface de.zimek.proteinfeatures.groups.Group

Returns a prefix for attribute description

getAttributeNamePrefix() - Method in class de.zimek.proteinfeatures.groups.SS

getClassID() - Method in class de.zimek.proteinfeatures.protein.CathID

getClassID() - Method in class de.zimek.proteinfeatures.protein.ScopID

getCoveredClassesArff() - Method in class de.zimek.proteinfeatures.ArffFileCreator

Returns the covered classes as arff-formatted Attribute-String.

getCoveredHierarchy() - Method in class de.zimek.proteinfeatures.ArffFileCreator

Returns the covered hierarchy as a single String.

getDataLine(Protein) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Returns a String providing the data-entry-line in arff-format for the given protein, at last the class according to the current set class-level in scop- or cath-notation and a newline.

getFamily() - Method in class de.zimek.proteinfeatures.protein.ScopID

getFold() - Method in class de.zimek.proteinfeatures.protein.ScopID

getGroupIndex(Protein, int) - Method in class de.zimek.proteinfeatures.attributeAssigner.AbstractGroupAssigner

Returns the group-index for the given index of the protein, with respect to the group.

getGroups() - Method in class de.zimek.proteinfeatures.groups.AbstractGroup

getGroups() - Method in class de.zimek.proteinfeatures.groups.CharGroup

getGroups() - Method in interface de.zimek.proteinfeatures.groups.Group

Returns a name for each group

getHomologousSuperFamily() - Method in class de.zimek.proteinfeatures.protein.CathID

getID(int) - Method in class de.zimek.proteinfeatures.protein.CathID

getID(int) - Method in class de.zimek.proteinfeatures.protein.ID

Returns the ID for the first level levels.

getID() - Method in class de.zimek.proteinfeatures.protein.Protein

getID(int) - Method in class de.zimek.proteinfeatures.protein.ScopID

getLevel(int) - Method in class de.zimek.proteinfeatures.protein.CathID

getLevel(int) - Method in class de.zimek.proteinfeatures.protein.ID

Returns the id-value in the specified level.

getLevel(int) - Method in class de.zimek.proteinfeatures.protein.ScopID

getSS() - Method in class de.zimek.proteinfeatures.parser.DSSPInterpreter

getSS() - Method in class de.zimek.proteinfeatures.protein.Protein

Returns the secondary structure.

getSuperfamily() - Method in class de.zimek.proteinfeatures.protein.ScopID

getTopology() - Method in class de.zimek.proteinfeatures.protein.CathID

group - Variable in class de.zimek.proteinfeatures.attributeAssigner.AbstractGroupAssigner

group - Variable in class de.zimek.proteinfeatures.groups.CharGroup

groups - Variable in class de.zimek.proteinfeatures.groups.AbstractGroup

groups - Variable in class de.zimek.proteinfeatures.groups.CharGroup