A C D E F G H I L M N O P R S T U V W

S

SCOP_HIERARCHY_SEPARATOR - Static variable in class de.zimek.proteinfeatures.protein.ScopID

SCOP_ID_SEPARATOR - Static variable in class de.zimek.proteinfeatures.protein.ScopID

SS - class de.zimek.proteinfeatures.groups.SS.

SS() - Constructor for class de.zimek.proteinfeatures.groups.SS

SSComposition - class de.zimek.proteinfeatures.attributeAssigner.composition.SSComposition.

SSComposition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.composition.SSComposition

SSDistribution - class de.zimek.proteinfeatures.attributeAssigner.distribution.SSDistribution.

SSDistribution() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.distribution.SSDistribution

SSTransition - class de.zimek.proteinfeatures.attributeAssigner.transition.SSTransition.

SSTransition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.transition.SSTransition

SUB_PACKAGES - Static variable in class de.zimek.proteinfeatures.ArffFileCreator

The subpackages for group descriptors.

SUPERFAMILY - Static variable in class de.zimek.proteinfeatures.protein.ScopID

ScopID - class de.zimek.proteinfeatures.protein.ScopID.

ScopID(String) - Constructor for class de.zimek.proteinfeatures.protein.ScopID

setAaIndex(AAIndex) - Method in class de.zimek.proteinfeatures.attributeAssigner.AutoCorrelationFunction

Sets the aaIndex.

setCathID(String) - Method in class de.zimek.proteinfeatures.protein.Protein

Sets the id as CathID

setCoil(int, int) - Method in class de.zimek.proteinfeatures.parser.DSSPInterpreter

setCoveredClasses(Protein[]) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Sets the covered classes according to the classes occuring in the given array of proteins.

setM(int) - Method in class de.zimek.proteinfeatures.attributeAssigner.AutoCorrelationFunction

Sets the m.

setMinSupport(int) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Sets the minSupport.

setScopID(String) - Method in class de.zimek.proteinfeatures.protein.Protein

Sets the id as ScopID.

ss - Variable in class de.zimek.proteinfeatures.parser.DSSPInterpreter

ss - Variable in class de.zimek.proteinfeatures.protein.Protein

subclasses(ID[], int) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Returns a String describing the set of subclasses splitted at the given level.

superfamily - Variable in class de.zimek.proteinfeatures.protein.ScopID