de.zimek.proteinfeatures.attributeAssigner
Class AbstractGroupAssigner

java.lang.Object
  de.zimek.proteinfeatures.attributeAssigner.AbstractArffRealAttributeAssigner
      de.zimek.proteinfeatures.attributeAssigner.AbstractGroupAssigner

All Implemented Interfaces:

ArffAttributeAssigner

Direct Known Subclasses:

AbstractGroupCompositionAssigner, AbstractGroupDistributionAssigner, AbstractGroupTransitionAssigner

public abstract class AbstractGroupAssigner

extends AbstractArffRealAttributeAssigner

Author:

Arthur Zimek

Field Summary

protected Group	group
protected java.lang.String	type

Fields inherited from class de.zimek.proteinfeatures.attributeAssigner.AbstractArffRealAttributeAssigner

WHITESPACE

Fields inherited from interface de.zimek.proteinfeatures.attributeAssigner.ArffAttributeAssigner

ATTRIBUTE_MARK

Constructor Summary

AbstractGroupAssigner()

Method Summary

java.lang.String	getAttributeDefinition() Provides the attribute-definition in arff-format with an ending newline.
protected int	getGroupIndex(Protein protein, int index) Returns the group-index for the given index of the protein, with respect to the group.

Methods inherited from class de.zimek.proteinfeatures.attributeAssigner.AbstractArffRealAttributeAssigner

attributes, getAttribute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

type

protected java.lang.String type

group

protected Group group

Constructor Detail

AbstractGroupAssigner

public AbstractGroupAssigner()

Method Detail

getGroupIndex

protected int getGroupIndex(Protein protein,
                            int index)

Returns the group-index for the given index of the protein, with respect to the group. If the group is an instance of SS, the group-index with respect to SS is returned, else the group-index with respect to the amino acid at the given index.

Parameters:

protein -

index -

Returns:

int

getAttributeDefinition

public java.lang.String getAttributeDefinition()

Description copied from interface: ArffAttributeAssigner

Provides the attribute-definition in arff-format with an ending newline.

Returns:

String

See Also:

ArffAttributeAssigner.getAttributeDefinition()