A C D E F G H I L M N O P R S T U V W

P

Parser - interface de.zimek.proteinfeatures.parser.Parser.

Polarity - class de.zimek.proteinfeatures.groups.Polarity.

Polarity() - Constructor for class de.zimek.proteinfeatures.groups.Polarity

PolarityComposition - class de.zimek.proteinfeatures.attributeAssigner.composition.PolarityComposition.

PolarityComposition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.composition.PolarityComposition

PolarityDistribution - class de.zimek.proteinfeatures.attributeAssigner.distribution.PolarityDistribution.

PolarityDistribution() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.distribution.PolarityDistribution

PolarityTransition - class de.zimek.proteinfeatures.attributeAssigner.transition.PolarityTransition.

PolarityTransition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.transition.PolarityTransition

Polarizability - class de.zimek.proteinfeatures.groups.Polarizability.

Polarizability() - Constructor for class de.zimek.proteinfeatures.groups.Polarizability

PolarizabilityComposition - class de.zimek.proteinfeatures.attributeAssigner.composition.PolarizabilityComposition.

PolarizabilityComposition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.composition.PolarizabilityComposition

PolarizabilityDistribution - class de.zimek.proteinfeatures.attributeAssigner.distribution.PolarizabilityDistribution.

PolarizabilityDistribution() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.distribution.PolarizabilityDistribution

PolarizabilityTransition - class de.zimek.proteinfeatures.attributeAssigner.transition.PolarizabilityTransition.

PolarizabilityTransition() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.transition.PolarizabilityTransition

Protein - class de.zimek.proteinfeatures.protein.Protein.

Protein(String, ID, String, String) - Constructor for class de.zimek.proteinfeatures.protein.Protein

ProteinConstants - interface de.zimek.proteinfeatures.protein.ProteinConstants.

ProteinLength - class de.zimek.proteinfeatures.attributeAssigner.ProteinLength.

ProteinLength() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.ProteinLength

parse(File) - Method in class de.zimek.proteinfeatures.parser.AstralDBParser

parse(File) - Method in class de.zimek.proteinfeatures.parser.ManifoldParser

parse(File) - Method in class de.zimek.proteinfeatures.parser.McGuffinParser

parse(File) - Method in interface de.zimek.proteinfeatures.parser.Parser

parseSingleProtein(File) - Method in class de.zimek.proteinfeatures.parser.ManifoldParser

Parses the proteins as given in the MANIFOLD directory.

parseSingleProtein(File) - Method in class de.zimek.proteinfeatures.parser.McGuffinParser

postfix - Variable in class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingAttribute

print(Protein[], PrintStream) - Static method in class de.zimek.proteinfeatures.parser.AbstractParser

printArffFile(Protein[], PrintStream) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Prints an arff file for the given proteins according to the current settings to the given PrintStream.

printForMotifScan(Protein[], PrintStream) - Static method in class de.zimek.proteinfeatures.parser.AbstractParser

Prints all proteins to the given PrintStream in format convenient for motifScan.

properties - Variable in class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner