A C D E F G H I L M N O P R S T U V W

C

CATH_HIERARCHY_SEPARATOR - Static variable in class de.zimek.proteinfeatures.protein.CathID

CATH_ID_SEPARATOR - Static variable in class de.zimek.proteinfeatures.protein.CathID

CLASS - Static variable in class de.zimek.proteinfeatures.protein.CathID

CLASS - Static variable in class de.zimek.proteinfeatures.protein.ScopID

CathID - class de.zimek.proteinfeatures.protein.CathID.

CathID(String) - Constructor for class de.zimek.proteinfeatures.protein.CathID

CharGroup - class de.zimek.proteinfeatures.groups.CharGroup.

CharGroup() - Constructor for class de.zimek.proteinfeatures.groups.CharGroup

checkFor(char, int) - Method in class de.zimek.proteinfeatures.parser.DSSPInterpreter

Returns length of sequence of given symbol starting with index in ss.

chop(String) - Static method in class de.zimek.ding.Arffizer

Returns the given String without leading whitespace.

chop(String) - Static method in class de.zimek.ding.DomainToAstralMapper

Returns the given String without leading whitespace.

classID - Variable in class de.zimek.proteinfeatures.protein.CathID

classID - Variable in class de.zimek.proteinfeatures.protein.ScopID

compareTo(Object) - Method in class de.zimek.proteinfeatures.protein.CathID

compareTo(Object) - Method in class de.zimek.proteinfeatures.protein.ScopID

concatenate(String[]) - Method in class de.zimek.proteinfeatures.ArffFileCreator

Returns a String describing a set of the given array of class-names.

coveredClasses - Variable in class de.zimek.proteinfeatures.ArffFileCreator

THe ids of covered classes.

createID(String) - Method in class de.zimek.proteinfeatures.protein.CathID

createID(String) - Method in class de.zimek.proteinfeatures.protein.ID

Returns a new ID for the given id-String.

createID(String) - Method in class de.zimek.proteinfeatures.protein.ScopID