A C D E F G H I L M N O P R S T U V W

M

MAXIMUM - Static variable in class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner

MINIMUM - Static variable in class de.zimek.ding.Arffizer

MOTIF_PROPERTY - Static variable in class de.zimek.proteinfeatures.ArffFileCreator

The property-name for a motif map.

ManifoldParser - class de.zimek.proteinfeatures.parser.ManifoldParser.

ManifoldParser() - Constructor for class de.zimek.proteinfeatures.parser.ManifoldParser

McGuffinParser - class de.zimek.proteinfeatures.parser.McGuffinParser.

McGuffinParser() - Constructor for class de.zimek.proteinfeatures.parser.McGuffinParser

MotifAssigner - class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner.

MotifAssigner assigns numbers of occuring motifs to given proteins, based on a motif map.

MotifAssigner() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner

m - Variable in class de.zimek.proteinfeatures.attributeAssigner.AutoCorrelationFunction

main(String[]) - Static method in class de.zimek.ding.Arffizer

This class simply transforms the protein attribute lists as provided by Ding and Dubchak to arff format, using minimum support of 7 for each class.

main(String[]) - Static method in class de.zimek.ding.DomainToAstralMapper

main(String[]) - Static method in class de.zimek.proteinfeatures.ArffFileCreator

Main routine to create an arff file providing the features as specified in a given property file.

main(String[]) - Static method in class de.zimek.proteinfeatures.parser.AstralDBParser

main(String[]) - Static method in class de.zimek.proteinfeatures.parser.McGuffinParser

mapToString(Map) - Static method in class de.zimek.ding.DomainToAstralMapper

mapping(char) - Method in class de.zimek.proteinfeatures.groups.CharGroup

mapping(char) - Method in interface de.zimek.proteinfeatures.groups.Group

Returns the index of the given amino acid in the current group.

mapping(char) - Method in class de.zimek.proteinfeatures.groups.Hydrophobicity

mapping(char) - Method in class de.zimek.proteinfeatures.groups.NormalizedVanDerWaalsVolume

mapping(char) - Method in class de.zimek.proteinfeatures.groups.Polarity

mapping(char) - Method in class de.zimek.proteinfeatures.groups.Polarizability

max - Variable in class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner

minSupport - Variable in class de.zimek.proteinfeatures.ArffFileCreator

Default minimum support.

motifSeparator - Variable in class de.zimek.proteinfeatures.attributeAssigner.MotifAssigner