A C D E F G H I L M N O P R S T U V W

D

DEFAULT_PACKAGE - Static variable in class de.zimek.proteinfeatures.ArffFileCreator

The default package to search for specified classes.

DEFAULT_PARSER_PACKAGE - Static variable in class de.zimek.proteinfeatures.ArffFileCreator

The default parser package.

DIGIT - Static variable in class de.zimek.ding.DomainToAstralMapper

DOMAIN2SCOP - Variable in class de.zimek.proteinfeatures.parser.ManifoldParser

DOMAIN_TO_FOLD - Static variable in class de.zimek.ding.Arffizer

DSSPInterpreter - class de.zimek.proteinfeatures.parser.DSSPInterpreter.

DSSPInterpreter(String) - Constructor for class de.zimek.proteinfeatures.parser.DSSPInterpreter

DSSPInterpreter(String, boolean) - Constructor for class de.zimek.proteinfeatures.parser.DSSPInterpreter

DingAttribute - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingAttribute.

DingAttribute() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingAttribute

DingCompositionLength - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingCompositionLength.

DingCompositionLength() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingCompositionLength

DingHydrophobicity - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingHydrophobicity.

DingHydrophobicity() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingHydrophobicity

DingPolarity - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingPolarity.

DingPolarity() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingPolarity

DingPolarizability - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingPolarizability.

DingPolarizability() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingPolarizability

DingSecondary - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingSecondary.

DingSecondary() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingSecondary

DingVolume - class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingVolume.

DingVolume() - Constructor for class de.zimek.proteinfeatures.attributeAssigner.dingAttributes.DingVolume

DomainToAstralMapper - class de.zimek.ding.DomainToAstralMapper.

Class to provide a mapping from domain ids in Ding's list to astral ids.

DomainToAstralMapper() - Constructor for class de.zimek.ding.DomainToAstralMapper

de.zimek.ding - package de.zimek.ding

de.zimek.proteinfeatures - package de.zimek.proteinfeatures

Provides the main class for creating features for proteins in arff-format.

de.zimek.proteinfeatures.aaindex - package de.zimek.proteinfeatures.aaindex

de.zimek.proteinfeatures.attributeAssigner - package de.zimek.proteinfeatures.attributeAssigner

de.zimek.proteinfeatures.attributeAssigner.composition - package de.zimek.proteinfeatures.attributeAssigner.composition

de.zimek.proteinfeatures.attributeAssigner.dingAttributes - package de.zimek.proteinfeatures.attributeAssigner.dingAttributes

de.zimek.proteinfeatures.attributeAssigner.distribution - package de.zimek.proteinfeatures.attributeAssigner.distribution

de.zimek.proteinfeatures.attributeAssigner.transition - package de.zimek.proteinfeatures.attributeAssigner.transition

de.zimek.proteinfeatures.groups - package de.zimek.proteinfeatures.groups

de.zimek.proteinfeatures.parser - package de.zimek.proteinfeatures.parser

de.zimek.proteinfeatures.protein - package de.zimek.proteinfeatures.protein

distributionDescription - Variable in class de.zimek.proteinfeatures.attributeAssigner.distribution.AbstractGroupDistributionAssigner

domainToAstral(String[], String[]) - Static method in class de.zimek.ding.DomainToAstralMapper

domains(InputStream) - Static method in class de.zimek.ding.DomainToAstralMapper