de.zimek.proteinfeatures.parser
Class AbstractParser

java.lang.Object
  de.zimek.proteinfeatures.parser.AbstractParser

All Implemented Interfaces:

Parser

Direct Known Subclasses:

AstralDBParser, ManifoldParser, McGuffinParser

public abstract class AbstractParser

extends java.lang.Object

implements Parser

Author:

Arthur Zimek

Constructor Summary

AbstractParser()

Method Summary

static void	print(Protein[] proteins, java.io.PrintStream out)
static void	printForMotifScan(Protein[] proteins, java.io.PrintStream out) Prints all proteins to the given PrintStream in format convenient for motifScan.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.zimek.proteinfeatures.parser.Parser

parse

Constructor Detail

AbstractParser

public AbstractParser()

Method Detail

print

public static void print(Protein[] proteins,
                         java.io.PrintStream out)

printForMotifScan

public static void printForMotifScan(Protein[] proteins,
                                     java.io.PrintStream out)

Prints all proteins to the given PrintStream in format convenient for motifScan. Format is per line: astralID,lowerCaseSequence

Parameters:

proteins -

out -