de.zimek.proteinfeatures.parser
Class McGuffinParser

java.lang.Object
  de.zimek.proteinfeatures.parser.AbstractParser
      de.zimek.proteinfeatures.parser.McGuffinParser

All Implemented Interfaces:

Parser

public class McGuffinParser

extends AbstractParser

Author:

Arthur Zimek

Field Summary

static java.util.Map	name2CATH
static java.util.regex.Pattern	WHITESPACE_SEQUENCE

Constructor Summary

McGuffinParser()

Method Summary

static void	main(java.lang.String[] args)
Protein[]	parse(java.io.File in)
Protein	parseSingleProtein(java.io.File in)

Methods inherited from class de.zimek.proteinfeatures.parser.AbstractParser

print, printForMotifScan

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

WHITESPACE_SEQUENCE

public static final java.util.regex.Pattern WHITESPACE_SEQUENCE

name2CATH

public static final java.util.Map name2CATH

Constructor Detail

McGuffinParser

public McGuffinParser()

Method Detail

parse

public Protein[] parse(java.io.File in)
                throws java.text.ParseException,
                       java.io.FileNotFoundException

Throws:

java.text.ParseException

java.io.FileNotFoundException

See Also:

Parser.parse(File)

parseSingleProtein

public Protein parseSingleProtein(java.io.File in)
                           throws java.text.ParseException,
                                  java.io.FileNotFoundException

Throws:

java.text.ParseException

java.io.FileNotFoundException

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Throws:

java.lang.Exception