de.zimek.proteinfeatures.groups
Class Hydrophobicity

java.lang.Object
  de.zimek.proteinfeatures.groups.AbstractGroup
      de.zimek.proteinfeatures.groups.Hydrophobicity

All Implemented Interfaces:

Group

public class Hydrophobicity

extends AbstractGroup

Author:

Arthur Zimek

Field Summary

Fields inherited from class de.zimek.proteinfeatures.groups.AbstractGroup

attributeNamePrefix, groups

Constructor Summary

Hydrophobicity()

Method Summary

int	mapping(char aa) Returns the index of the given amino acid in the current group.

Methods inherited from class de.zimek.proteinfeatures.groups.AbstractGroup

getAttributeNamePrefix, getGroups

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Hydrophobicity

public Hydrophobicity()

Method Detail

mapping

public int mapping(char aa)

Description copied from interface: Group

Returns the index of the given amino acid in the current group.

Parameters:

aa - the aminoacid to return the index of

Returns:

int -1 if the aa is not assigned to a group, the index within the group otherwise