de.zimek.proteinfeatures.groups
Class CharGroup

java.lang.Object
  de.zimek.proteinfeatures.groups.CharGroup

All Implemented Interfaces:

Group

Direct Known Subclasses:

AA, SS

public abstract class CharGroup

extends java.lang.Object

implements Group

Author:

Arthur Zimek

Field Summary

protected char[]	group
protected java.lang.String[]	groups

Constructor Summary

CharGroup()

Method Summary

java.lang.String[]	getGroups() Returns a name for each group
protected void	init()
int	mapping(char aa) Returns the index of the given amino acid in the current group.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.zimek.proteinfeatures.groups.Group

getAttributeNamePrefix

Field Detail

group

protected char[] group

groups

protected java.lang.String[] groups

Constructor Detail

CharGroup

public CharGroup()

Method Detail

init

protected void init()

mapping

public int mapping(char aa)

Description copied from interface: Group

Returns the index of the given amino acid in the current group.

Specified by:

mapping in interface Group

Parameters:

aa - the aminoacid to return the index of

Returns:

int -1 if the aa is not assigned to a group, the index within the group otherwise

See Also:

Group.mapping(char)

getGroups

public java.lang.String[] getGroups()

Description copied from interface: Group

Returns a name for each group

Specified by:

getGroups in interface Group

Returns:

String[] array of names for each group

See Also:

Group.getGroups()