de.lmu.ifi.dbs.elki.algorithm
Class MaterializeDistances<V extends RealVector<V,?>,D extends NumberDistance<D,N>,N extends Number>

java.lang.Object
  de.lmu.ifi.dbs.elki.logging.AbstractLoggable
      de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizable
          de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm<O,R>
              de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm<V,D,CollectionResult<CTriple<Integer,Integer,Double>>>
                  de.lmu.ifi.dbs.elki.algorithm.MaterializeDistances<V,D,N>

Type Parameters:

V - Vector type

All Implemented Interfaces:

Algorithm<V,CollectionResult<CTriple<Integer,Integer,Double>>>, Parameterizable

public class MaterializeDistances<V extends RealVector<V,?>,D extends NumberDistance<D,N>,N extends Number>
extends DistanceBasedAlgorithm<V,D,CollectionResult<CTriple<Integer,Integer,Double>>>

Algorithm to materialize all the distances in a data set.

The result can then be used with the DoubleDistanceParser and MultipleFileInput to use cached distances.

Symmetry is assumed.

Author:

Erich Schubert

Field Summary

private CollectionResult<CTriple<Integer,Integer,Double>>

result

Fields inherited from class de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm

DISTANCE_FUNCTION_ID, DISTANCE_FUNCTION_PARAM

Fields inherited from class de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizable

optionHandler

Fields inherited from class de.lmu.ifi.dbs.elki.logging.AbstractLoggable

debug, logger

Constructor Summary

MaterializeDistances()
Empty constructor.

Method Summary

Description	getDescription() Describe the algorithm and it's use.
CollectionResult<CTriple<Integer,Integer,Double>>	getResult() Return a result object
protected CollectionResult<CTriple<Integer,Integer,Double>>	runInTime(Database<V> database) Iterates over all points in the database.

Methods inherited from class de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm

getDistanceFunction, setParameters

Methods inherited from class de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm

isTime, isVerbose, run, setTime, setVerbose

Methods inherited from class de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizable

addOption, addParameterizable, addParameterizable, checkGlobalParameterConstraints, collectOptions, getAttributeSettings, getParameters, rememberParametersExcept, removeOption, removeParameterizable, shortDescription

Methods inherited from class de.lmu.ifi.dbs.elki.logging.AbstractLoggable

debugFine, debugFiner, debugFinest, exception, progress, verbose, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.lmu.ifi.dbs.elki.utilities.optionhandling.Parameterizable

checkGlobalParameterConstraints, collectOptions, getParameters, shortDescription

Field Detail

result

private CollectionResult<CTriple<Integer,Integer,Double>> result

Constructor Detail

MaterializeDistances

public MaterializeDistances()

Empty constructor. Nothing to do.

Method Detail

runInTime

protected CollectionResult<CTriple<Integer,Integer,Double>> runInTime(Database<V> database)
                                                               throws IllegalStateException

Iterates over all points in the database.

Specified by:

runInTime in class AbstractAlgorithm<V extends RealVector<V,?>,CollectionResult<CTriple<Integer,Integer,Double>>>

Parameters:

database - the database to run the algorithm on

Returns:

the Result computed by this algorithm

Throws:

IllegalStateException - if the algorithm has not been initialized properly (e.g. the setParameters(String[]) method has been failed to be called).

getDescription

public Description getDescription()

Describe the algorithm and it's use.

Returns:

a description of the algorithm

getResult

public CollectionResult<CTriple<Integer,Integer,Double>> getResult()

Return a result object

Returns:

the result of the algorithm